Flow cytometry for detection of apoptosis PI single staining

Apoptosis, or programmed cell death, is a fundamental biological process characterized by distinct morphological and biochemical changes at the cellular, subcellular, and molecular levels. These alterations include nuclear condensation, organelle fragmentation, modifications in cell membrane composition, and overall changes in cell morphology. Among these, nuclear changes are particularly distinctive and serve as key indicators of apoptosis. One of the most notable features is the alteration in DNA staining properties. During apoptosis, the DNA becomes less stainable with chromosomal fluorescent dyes, such as propidium iodide (PI). This reduction in DNA dyeability is widely recognized as a hallmark of apoptotic cells. However, it's important to note that this change can also result from other factors like DNA degradation or structural changes, so careful interpretation is essential. Another significant feature is the change in light scattering properties. Flow cytometry is commonly used to analyze these changes. Forward scatter (FSC) correlates with cell size, while side scatter (SSC) reflects the internal complexity of the cell. In apoptotic cells, the nucleus becomes condensed and the cell shrinks, leading to reduced FSC. At the same time, the breakdown of chromatin and nuclear membranes may increase the number of intracellular particles, causing an increase in SSC. This distinction helps differentiate apoptotic cells from necrotic ones, which typically show increased FSC and SSC due to cell swelling. The reliability of using light scattering for apoptosis detection depends on the uniformity of cell morphology and the nuclear-to-cytoplasmic ratio. For example, lymphocytes often show more consistent results compared to tumor cells, where the variability can reduce accuracy. However, combining light scattering with surface immunofluorescence allows for the identification of specific lymphocyte subsets undergoing apoptosis, making it a powerful tool in cell analysis. **Reagents and Instruments:** - PBS solution - PI Stain: Dissolve 100 µg/ml in PBS (pH 7.4), store in a brown bottle at 4°C away from light - 70% Ethanol - 400-mesh filter - Flow Cytometer **Experimental Procedure:** 1. Collect 1–5 × 10⁶ cells/mL, centrifuge at 500–1000 rpm for 5 minutes, and discard the supernatant. 2. Wash once with 3 mL PBS. 3. Resuspend in ice-cold 70% ethanol, fix at 4°C for 1–2 hours. 4. Centrifuge again, resuspend in 3 mL PBS for 5 minutes. 5. Pass through a 400-mesh filter, centrifuge at 500–1000 rpm for 5 minutes, and remove the PBS. 6. Stain with 1 mL PI solution, incubate in the dark at 4°C for 30 minutes. 7. Analyze using flow cytometry: excite PI with a 488 nm argon laser, detect emitted fluorescence above 630 nm. 8. Interpret results: Apoptotic cells appear as a sub-G1 peak on the PI histogram, typically with a fluorescence intensity of ~0.45, compared to the G1/G0 peak at 1.0. Red blood cells from chicken and carp can be used as reference standards at 0.35 and 0.7, respectively. **Precautions:** While decreased DNA stainability is a key indicator of apoptosis, it may also reflect other conditions, such as DNA content reduction or structural changes. Always interpret results carefully, and use gating techniques to exclude debris and aggregates when analyzing histograms.

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